Bioconductor QuasR error

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QuasR qQCReport QuasR error Error in .normarg_totalsize(totalsize)

5.3 years ago A.Singh • 0

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quasR quasr error alignmentparameters quasr

6.4 years ago Amer Ghalawinji • 0

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quasr quasr error

8.2 years ago jlncrnt ▴ 10

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quasr quasr error paired-end reads rnaseq

8.3 years ago guillaume.dachy • 0

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quasr error

updated 9.2 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.2 years ago by ezgi_can00 • 0

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quasr error

9.2 years ago Paul Ríos • 0

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quasr error

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by maedakus ▴ 10

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quasr error

updated 9.3 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.3 years ago by tarek.mohamed ▴ 10

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QuasR Error

9.3 years ago tarek.mohamed ▴ 10

9 results • Page 1 of 1

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Answer: edgeR::cpm() results in negative values from raw counts of 0 by ATpoint ★ 4.8k

The function, when `log = TRUE` adds a small prior count to the counts before taking the log, avoiding taking the log of 0. If that prior i…

Answer: edgeR::cpm() results in negative values from raw counts of 0 by James W. MacDonald 68k

It's calculated exactly how you might expect (it's called counts/million counts for a reason). ``` > y <- matrix(rnbinom(20,size=1,mu=…

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Leonardo Collado Torres ★ 1.1k

Thanks for posting this Kinnary. See also https://github.com/LieberInstitute/spatialLIBD/issues/106 for more details on the background.

Answer: Gene Ontology (GO) Analysis by James W. MacDonald 68k

The main difference is that `enrichGO` fits a conventional hypergeometric test whereas `hyperGTest` allows you to do a conditional test as …

Comment: blockwiseModule crashes in the end and doesn't generate modules by drivingdirectionsonline • 0

Solution: The error is likely due to a conflicting cor() function from another package (like psych). Restart R, run blockwiseModules() befo…

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edgeR::cpm() results in negative values from raw counts of 0

Comment: Differential expression analysis using two TCGA datasets

C: Annotating HTA 2.0 genes

A: Annotating HTA 2.0 genes

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